Struct symcurve::cli::Cli

pub struct Cli {
    pub input: PathBuf,
    pub output: PathBuf,
    pub verbose: bool,
    pub matrices: Option<PathBuf>,
    pub curve_step: u16,
    pub curve_scale: f32,
    pub curve_step_one: u16,
    pub curve_step_two: u16,
    pub symcurve_win: u16,
    pub symcurve_step: u16,
    pub min_linker_size: u16,
}

Fields

input: PathBuf

FASTA input file path

output: PathBuf

bigWig output file path

verbose: bool

verbose setting

matrices: Option<PathBuf>

optional matrices YAML file

curve_step: u16

curve step

curve_scale: f32

curve scale

curve_step_one: u16

curve step one

curve_step_two: u16

curve step two

symcurve_win: u16

symcurve window

symcurve_step: u16

symcurve step

min_linker_size: u16

minimum linker size

Trait Implementations

impl Args for Cli

fn group_id() -> Option<Id>

Report the [ArgGroup::id][crate::ArgGroup::id] for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to [Command] so it can instantiate Self.

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to [Command] so it can update self.

impl CommandFactory for Cli

fn command<'b>() -> Command

Build a [Command] that can instantiate Self.

fn command_for_update<'b>() -> Command

Build a [Command] that can update self.

impl Debug for Cli

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for Cli

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from [ArgMatches], parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches ) -> Result<Self, Error>

Instantiate Self from [ArgMatches], parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl Parser for Cli

fn parse() -> Self

Parse from std::env::args_os(), [exit][Error::exit] on error.

fn try_parse() -> Result<Self, Error>

Parse from std::env::args_os(), return Err on error.

fn parse_from<I, T>(itr: I) -> Self

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, [exit][Error::exit] on error.

fn try_parse_from<I, T>(itr: I) -> Result<Self, Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, return Err on error.

fn update_from<I, T>(&mut self, itr: I)

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, [exit][Error::exit] on error.

fn try_update_from<I, T>(&mut self, itr: I) -> Result<(), Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, return Err on error.