Module calls 

Nucleosome calling from symmetry scores, and greedy selection of non-overlapping calls.

Structs

CallParams

The parameters of nucleosome calling.

NucleosomeCall

One called nucleosome, positioned by its dyad.

Constants

NUCLEOSOME_HALF_WIDTH

Half a nucleosome’s footprint: a call spans dyad - 73 ..= dyad + 73.

NUCLEOSOME_SIZE

A nucleosome’s footprint in bases, 2 * NUCLEOSOME_HALF_WIDTH + 1.

SATURATED_SCORE

Scores at or above this are reported clamped to it.

Functions

call_nucleosomes

Turn symmetry scores into overlapping nucleosome calls.

greedy_non_overlapping

Select non-overlapping calls, taking the highest scoring first.