Module scan 

Scoring whole records, piece by piece, across threads.

crate::fasta::split_seq_by_gaps breaks a record at unscoreable bases, and the resulting pieces are independent: curvature is computed from a sliding window that never spans a gap, so no piece needs anything from its neighbours. That makes the pieces the natural unit of parallelism.

Structs

Chunk

One unit of independently scoreable work within a piece.

CurveParams

The parameters that define a curvature calculation.

PieceCurves

The curvature scores for one piece, with the positions they belong to.

SymParams

The parameters of the symmetry stage.

Enums

Stage

Which stage of the calculation to produce.

Constants

DEFAULT_CHUNK_SCORES

The default number of scores one chunk produces.

Functions

chunks

Divide a piece of piece_len bases into chunks producing chunk_scores scores each.

score_bases

Score a run of bases with fresh state.

score_piece

Score a single piece.

score_piece_chunked

Score a single piece, dividing it into chunks of the given size.

score_pieces

Score every piece, in parallel, preserving input order.

score_symmetry_bases

Score a run of bases through to symmetry, with fresh state.

sym_chunks

Divide a piece into chunks of symmetry scores.