List of all items

Structs

• cli::Cli
• curve::calls::CallParams
• curve::calls::NucleosomeCall
• curve::iters::CurveIter
• curve::iters::SymCurveIter
• curve::scan::Chunk
• curve::scan::CurveParams
• curve::scan::PieceCurves
• curve::scan::SymParams
• fasta::RecordPiece
• memory::MemoryBudget
• memory::ParseBudgetError
• output::UnknownFormat
• stream::RunStats
• stream::ScanConfig

Enums

• cli::Roll
• cli::Stage
• curve::matrix::MatrixLookupError
• curve::matrix::RollType
• curve::scan::Stage
• output::OutputFormat

Traits

• curve::iters::SymCurveIterator

Functions

• curve::calls::call_nucleosomes
• curve::calls::greedy_non_overlapping
• curve::matrix::lookup_by_index
• curve::matrix::matrix_lookup
• curve::matrix::nuc_index
• curve::matrix::triplet_indices
• curve::scan::chunks
• curve::scan::score_bases
• curve::scan::score_piece
• curve::scan::score_piece_chunked
• curve::scan::score_pieces
• curve::scan::score_symmetry_bases
• curve::scan::sym_chunks
• fasta::split_seq_by_gaps
• output::write_bedgraph_streaming
• output::write_bigwig_streaming
• output::write_gff_streaming
• stream::chrom_sizes
• stream::chrom_sizes_from_index
• stream::for_each_record_calls
• stream::for_each_score
• stream::for_each_score_indexed
• stream::load_index

Type Aliases

• curve::matrix::NucMatrix
• stream::ChromSize

Constants

• curve::calls::NUCLEOSOME_HALF_WIDTH
• curve::calls::NUCLEOSOME_SIZE
• curve::calls::SATURATED_SCORE
• curve::iters::DEGENERATE_SYMMETRY
• curve::matrix::ROLL_ACTIVE
• curve::matrix::ROLL_SIMPLE
• curve::matrix::TILT
• curve::matrix::TRIPLET_SIZE
• curve::matrix::TWIST
• curve::scan::DEFAULT_CHUNK_SCORES